Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbx21

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
Th1 cells
antibody
T-bet (Lab produced (Szabo et al., Nature 2000))
cell type
Th1
cell number
100000000
genotype
wild type

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
30460034
Reads aligned (%)
65.1
Duplicates removed (%)
24.2
Number of peaks
12983 (qval < 1E-05)

mm9

Number of total reads
30460034
Reads aligned (%)
65.0
Duplicates removed (%)
24.4
Number of peaks
12979 (qval < 1E-05)

Base call quality data from DBCLS SRA